Scaffold Ga0181373_1001075

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1001075
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5460
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022417	Metagenome / Metatranscriptome	214	N
F050395	Metagenome / Metatranscriptome	145	Y
F089558	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_100107511	F050395	AGGA	MYPLKRKNKFNWAYKFLYWNGDENIVYLYTIETKEGFQVAESAAWGNATFDGCNNMKYIGKNKMEVENGTDA
Ga0181373_100107512	F022417	GGAGG	MAQMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKVEALEAEGLVTDISHKAQAVMNSIKDFAMDCTAQDLDKARLYTASALTELGIR
Ga0181373_10010754	F089558	AGGAGG	MTLLQYSEQQGKKPTGQFSATRFILDNPEAKKIFLKVAKEAESEYISDTLAAQYLVDKYEQFKHLNYNTVRRYFRDYRDGRIK