NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1079408

Scaffold Ga0181383_1079408


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1079408 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021557Metagenome218N
F054939Metagenome139Y
F064806Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10794081F054939GGAMSVYTFTCTIMVCMYLAYLWGRKLTRVEIAAEAARNTLNRLEKEGFIKYEVNKKTGEKEFVRFP
Ga0181383_10794082F021557GAGGMRLLLCALLLTSNAIACDYKSNDEVQFEGSIESVRLIDRKVYPYVDDTRICTMHIESRIEGEWYSSRGKYIFGSNVSEDEACSHAESRAKSVVIKEHIPETIRSKRNLSCDLTEVRNSCKIIYMNVEMPVLGTQRVKLKTCEE
Ga0181383_10794083F064806GAGMFKFIFGVIVGFMIFKFDWIDDMSNLVNDYGVKEAIIEKLQEDIDIDNLDNGGESE

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