Scaffold Ga0181383_1031518

Overview

Basic Information

• Taxon OID: 3300017720
• Scaffold ID: Ga0181383_1031518
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1428
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004376	Metagenome / Metatranscriptome	441	Y
F008386	Metagenome	334	Y
F027481	Metagenome / Metatranscriptome	194	Y
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_10315183	F075988	GAGG	MTNKLSQWLIDYVKKKNGVDLTNVPSDKSWTELNPFRDSTMLSDNVIEFINEKNLSGIKSSMDLVEEQSDKAAKEQRELNTIKGDKXSA
Ga0181383_10315184	F004376	AGGGGG	MKCLDCGCDEGTLLKEFQEQPNKNWSWYELSEMTAVCVSCGSENIKEDKXVARRKNI
Ga0181383_10315185	F027481	AGGAGG	MSSEKKKYLVKFNCIIGEYEHIASYVFDKQMSEYQYCKKFWGLSKKNELKTNVFWDDFMQNAIEVYSEKEIKTNEYNKLQELGVV
Ga0181383_10315186	F008386	GGGGG	MSSEKQLILIILAAVVVFGYQYYKDEKKKHDEKLQRHLSKYFDRK