NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1013197

Scaffold Ga0181383_1013197


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1013197 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002374Metagenome / Metatranscriptome566Y
F004882Metagenome / Metatranscriptome420N
F013311Metagenome / Metatranscriptome272Y
F095250Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10131971F004882N/ANVRLRVASAVDTAGTTATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYVNNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGIFIGG
Ga0181383_10131973F002374N/AMNQVLLYASVILASVSFFLCCYACVRVGRLLNSVKGLDWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPKDKLGG
Ga0181383_10131974F013311GAGGMAFLGDFGKFFGLGSSEEVLGDVGEIIGGKPGRFVGETVARATDNLAGSDNVSAFSTADQALEQSAVPVSQVGSPRPMETSNIGLTGRTQQAGLGTLVPTLIGGARSVFPQISKFVSTPAGSIGTGIATGVGVQMFSGSQKSMDKPVLTQSRRNKARVRQLVNFMGIDGAAQFLSQASGKRVTGGDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMARTTRRPAMRRASSTTLIKN
Ga0181383_10131975F095250AGGAGMPLVQKTLTLAAGATSDNILANTNYEFIDGNVRLRVASAVDTAGTSATAD
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