Scaffold Ga0181383_1000872

Overview

Basic Information

• Taxon OID: 3300017720
• Scaffold ID: Ga0181383_1000872
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8897
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F054789	Metagenome / Metatranscriptome	139	N
F090175	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_100087216	F054789	AGAAGG	MTREQQRRFDRMAAARLSKMNGGIPRHIALSNSKSITLRNKLKRLGIEGEHVNAALAMVDEIGLQEVMSRQPLGSRFASMPQSKRKAKVWKP
Ga0181383_100087217	F009527	GGTGG	MKRNAFPPSIVNLLLQEGQRWKVDGSMREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGMPLHWAGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDSDLIPQERKEWKGEIEHGQWELRKICKDIRFRDYFWSAKDRMLVKAPFPKFLSKEVDAKKADLLSRPMRYHSIEDKEVMLGIVKPPQKRRQKRKKVEE
Ga0181383_100087218	F090175	AGGTGG	MSEEETASSSHKGGAKGRTWADVFVGASYLTGGGLFVVAMAVLLYFLVGEVPGWFFIALLSSLVFIPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLEIEGNSVLFQSNSGVMRQVLTSIDVENKTAIGSEFANATQIDQVRDLTTLQQMVELLQSTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSESFGIEETNIELEVDDTIEDMVDDFE