Scaffold Ga0181383_1000864

Overview

Basic Information

• Taxon OID: 3300017720
• Scaffold ID: Ga0181383_1000864
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8986
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054844	Metagenome	139	Y
F057352	Metagenome	136	Y
F086310	Metagenome	111	Y
F099989	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_100086411	F054844	AGGTGG	MKAGTLVAFRGSVGLVMGACKKRWAKPADVWVMWTDESKPRIECGLMLEVLNASR
Ga0181383_100086413	F086310	GGAG	MQVGDIVKHFLTEQLGIVMTVVVAKPRRSIGSVHVLWTTKGESLFGPGNKEWCSPESLTVLTTA
Ga0181383_100086415	F099989	GGAGG	MKVGDLVRIKYDGTVALVARIIDGDHPWIYLHTGESFRSDKLEVVSAGV
Ga0181383_100086420	F057352	GAGG	MKVWIMRGTYEAEAFTSVHLTEKGCALACIADVLEFLGIEDEETALRLINEHYPFTETDGEQTEAIEWDSDKLKDMTREELWQVFNDWTETCWEHMADRSYYIDATSQMIQP