Scaffold Ga0181383_1000056

Overview

Basic Information

• Taxon OID: 3300017720
• Scaffold ID: Ga0181383_1000056
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29354
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (75.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059004	Metagenome	134	N
F062720	Metagenome	130	N
F074875	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_100005618	F062720	AGTAG	MSANFDSNVSLTLQVAFDSEPFDETQSYTDITSYLRAFTTRRGRANELGDFVAGTMSFSVSNADNRFNPNNASSPYYDSGNARTKIQPLKRVRMSATYDSTTYLIFEGFLQSVPVKFISEGADSIVTFTCVDAFKIFQSSQLDGVGWRLGLAGFSELGLSTRLSYVDEQELSSARITRILDAIGFPSNRRDILTGTKQVISQAITTNVLTGLRECETAENGQFFISKDGKATFRNREYKLSNTKAINVQGIFSNDGSNLPYTDVSTSFDDNEIINVYEWQRSGGSIQYKADTNSVLRYRAKELNKSTINISDADVLSIIEQKIAETSLPIVRIDNLTCNPRENTSLWEQVLGREFGDRISVKIVNVDGSSFTDELWIESISHNVNASSQSWSWTATLSPAGSSAWILGQAKLGEGTRFVY
Ga0181383_100005634	F074875	N/A	MIIDCNCPKEKHCAGHITIQNAKLLFSNYKYMNRDVLDDIVTVPTNRCFMCGEEGTVDVIRKDWHEYMWDNPRKEVREYFPYLDKSGWEQIISGSHPKCFDDLFGEEE
Ga0181383_10000566	F059004	AGGAG	MLKKYNFTEQDKIGKLGEKLILKHYNTITDDSGNKFHARATRIDEQLQGADLMVFNQSLKTNYIEVKTDTQIEETNNLALEYMIEQGNGDLQIGCQMKTFADFMMYWSYPTNFVRYWNPTKLQPYIVSWIRDSKYKSVKVINENQQGDKWFAHCLLVPTYEFDKLKQVNSFLVSLDVLQGVLDEED