Scaffold Ga0181383_1000018

Overview

Basic Information

• Taxon OID: 3300017720
• Scaffold ID: Ga0181383_1000018
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42809
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (79.66%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F010091	Metagenome / Metatranscriptome	308	Y
F022423	Metagenome / Metatranscriptome	214	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y
F028814	Metagenome / Metatranscriptome	190	Y
F038249	Metagenome / Metatranscriptome	166	N
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_100001817	F010091	AGTAG	MIVIPNTIGIMNTMNIDELLNEAENGKRTAILNRITKEAKPFWDGCEERVIAGRPIKPYVVSRLLKEHYNIKISESAVRNHFSNLASNVEK
Ga0181383_100001819	F040134	AGG	MYSMNDSDVKSIWRLQSIEYSGLGDKPHFILMNDNGDFKMEPIERGIHNLRKLIGLEEEE
Ga0181383_100001821	F022423	AGAAG	MAQDLSFITNTIKTMTESVQNTETLHKIIGTANQYAKTMKFSNDKTKWSDEQLDKYLAMIEKLVDMPVEYTQDDFDKMSLEEKLDAAGLSATDITPGLQGAGDMLGGIVEDVQKQNKYRDDLKCPYCKAMVYDNRNSKKSDKSPDFTCSTNDPVVCGGHTGKWRKSWWLDNSDLPEEWGI
Ga0181383_100001823	F038249	AGGAGG	MIPESFRGEEIPAYIKSKTQLVAYILTRYMGESPISNWEFVAELYCHRFGGIIHNLRQEGYKITTLPAKKRGLVHYYCTELPTKAAIS
Ga0181383_100001826	F025614	GGAGG	MDKKKIDINNINIFTHPRYMKVWANQFNKACGSDTFKVQPDMEKLRFLMDKFVIDYNYHLEQLGEEE
Ga0181383_100001834	F023355	AGAAG	MALPGAYVVNSPKPGEFCNNCVHYSNNYCLKFNKEVAPFGWCAVWQEVNLEV
Ga0181383_100001847	F028814	GGAG	MSILIMMKEGGSLNIDTIGNKPIDEDIDLLPDAASVDYNPQLMLWSGTGFALQYLDVDIMLLLGAE
Ga0181383_100001852	F003196	AGG	MQLQKEVLIDISDNASNSSAAQCDGLLLSGIVFPAAMTGATITFDFSFNGTTWYDVVETDGTEVSYSVSAGNVVRVDPSGWAFASPGFIRVTSASSEAADRTINLIFKQS
Ga0181383_100001854	F003423	GGAGG	MEEFDAPENGVKQMRETIDRKDESIKKLEAELASFKDKEIDNVFGQLGLSTNNGFGKALKQVYDGPVDTESIAQFAKDEYGYETNGQVQEVTQPAPETIVQDDARARVAALDANSRSDVPLDANDELVKALRTASTEDSIKAKLNFMEQQKQQQK