NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1018150

Scaffold Ga0181390_1018150


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1018150 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2335
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037985Metagenome167N
F061354Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0181390_10181504F037985GGAGMEKITTASKSQLRLRFIACVYPIAYMLVWPLVYGILPAYSNYYIFGGMYFTVATSMMAWAMYLHRDIKWSVPAYALVGVALFDCVDYWMLHNIFAFIFFLSSTYLMKTDKRFDWLGDISVTWYVLLVIPGGVFWFEAIQAVLISWFHMSYVRRLWRVRSGKE
Ga0181390_10181505F061354AGGAMQVMVWVTESNLELLNNGEVIQYWVREPGNALDVVQVQISYDDFIRLRDNQPEHYVTRDHMRFINYSGIQDDNYYTSDKPGAYDEGHGVED

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