Scaffold Ga0181390_1009126

Overview

Basic Information

• Taxon OID: 3300017719
• Scaffold ID: Ga0181390_1009126
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3549
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F076111	Metagenome	118	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_10091261	F076111	N/A	MTLEQLTTKLELNILIERVLEKNGAYKQPVSKEEALKGLTLSEDAKSTLNTLKSALEQINKLYDLSIMYSKELKNKDSQIYKLSVENSKLRTRANLADQRTNNITEYIELHKNKTT
Ga0181390_100912611	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNEGMLNRNRIEQNGKRI
Ga0181390_100912612	F018478	GAG	MVKEYEEMDWSKNYTYKDKKIYISHEAKKYIICSFNENGQGKFKLDKTEFYG
Ga0181390_10091268	F103288	N/A	MSIIIISILAVLAWTSLFKQTFSTKEGFRYVYEPISKILYTLDFKPLNCAYCLSFWIGLAFSIGLLDITYMVIFLYFARQN
Ga0181390_10091269	F025412	N/A	MNYRELKWGALKSYATKLGINTKGMTKDVILEWLDAMPDVAHGIEELTPFTGIKQEHPLFNEVEPYLPYLKAYKKLNAISRDPKVNEEIATLFLKYIEQDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI