Scaffold Ga0181390_1007333

Overview

Basic Information

• Taxon OID: 3300017719
• Scaffold ID: Ga0181390_1007333
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4024
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016757	Metagenome / Metatranscriptome	245	Y
F028792	Metagenome / Metatranscriptome	190	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_100733310	F016757	GGAG	VTERTWEVKVEATTTREIIVHANTEYEAQIKAQIDMVGLVGGENTKVLRVQEITDE
Ga0181390_10073338	F029934	GGAG	MATVTRTCLACNGGGIAEYDKPVIDHANGGWIDSSYGRCDVCDGEGDLHVLSEFTSLDILSFLNESAKILENADIVDSTLDDIYGHIKDAKDKVREYIKFHGYDGDDR
Ga0181390_10073339	F028792	AGGAG	MSNRGDYKVRVRMTIEREVIVNADGFDDAEEKALKEAISPVGRISDETKGYDAEVLWAVEHGSLSNWSKDDGNSN