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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017719 Open in IMG/M |
| Scaffold ID | Ga0181390_1004845 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5162 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009527 | Metagenome / Metatranscriptome | 316 | Y |
| F090175 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181390_10048451 | F009527 | GAGG | MNRNTFPPSIVNLLLQEGQRWRVHGETREALGTGIIPVVASARGGKTSLAYAFIEYVIKYTKRPVILDSFPQKVIDEGIPQHWRGRVSNTSFNDIAEVDEPAVWLLDDSATHFNSRSAMSSANQTLAKAAGVLSHFGGGMTVIFTTQSMSGIDLSLLRYTTISPVIRWVDKDLIAQERKEWRSEVEHGQYELRAVCKDARLRDFFWSAKDSCLVKAPYPEFLKKENDPIKADLLSRPMRYHSVEDKKIMLGIMKPPAKQRAKRKKVSVDE |
| Ga0181390_10048452 | F090175 | GAGG | MSVEESSNIGTLPPTQGRTWADVFVGATYITGGLLFLGLMAGALYFLVGKVPTWFFIAIGSSLIFIPFMIERAKEDAELILVTDGPHRLTEYRIGNKVDLEIEGNAVRFQSKSGVNRYILSSIDVDAKKAVGTEFAGFSQIDQVRDLTTLDRMVEMLQSTLKESRVSAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEITEAFGVVEENVQLDPNETLEELAEDFE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |