Scaffold Ga0181390_1002920

Overview

Basic Information

• Taxon OID: 3300017719
• Scaffold ID: Ga0181390_1002920
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6916
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018004	Metagenome / Metatranscriptome	237	N
F050986	Metagenome / Metatranscriptome	144	N
F054001	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_100292012	F018004	AGG	MGEVSILDRNAEEVRAVLRKLLDACEAGEITGAIIITEYQTGFDLDMPGTFSTDPDAIASIIGRLQMASNVFSQMSWEDEHGD
Ga0181390_10029205	F054001	GGA	MIPDWILSLQSSATWARRYENRASFEWDENVVEELQIIAGRLETLLSEQEERYDECMANA
Ga0181390_10029206	F050986	AGGAG	MGNQTTENLVGDLEDWIFEISRLVKNGHQLSPEALVFLQNIHPALDKLSEEMLEDEHSCNEMKQAEAEESDVIINAYLQSVRGLS