NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1002078

Scaffold Ga0181390_1002078


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1002078 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8451
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009527Metagenome / Metatranscriptome316Y
F054789Metagenome / Metatranscriptome139N
F067591Metagenome / Metatranscriptome125N
F090175Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181390_100207815F054789N/AMTREQQRRFDRMAAARLSKMNGGIPRHIALSNSKSITLRNKLKRLGIEGNHVDAALNMVDEIGLQEVMANQPLGSRFASMPQSKRKAKVWKP
Ga0181390_100207816F009527GGTGGMKRNCFPPSIVNLLLQEGQRWKVDGSMREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPPHWAGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKGEIEHGQWELRKICKDIRFRDYFWSAKDGMLVKAPFPKFLSKEVDPRKADLLSRPMRYHSIEDKEVMLGIVKPPQKRRQKRKKVET
Ga0181390_100207817F090175GAGGLSNEEAASSSHKGGAKGRTWADVFVGASYLTGGGLFVVAMAVLLYFLVGEVPGWFFIALLSSLVFIPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLEIEGNSVLFQSNSGVMRQVLTSIDVENKTAIGSEFANATQIDQVRDLTTLQQMVQMLQSTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSESFGIEETSMELEIDDTIEDLVDDFE
Ga0181390_10020785F067591AGTAGGMATWQAQVKQISLALSVVGALWMALTVSLGDAFNIVTDPASVDPATAASLGGIDFIDRVAVSGVFVTLLGSAGFGLISVSGNNPPALNTILRTAPLILGFVAFSAFGSEAWDLISGNRTWANYDDIQNSYMLFLASSMVGAIVGLIDRR
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