Scaffold Ga0181390

Basic Information
Taxon OID	3300017719 Open in IMG/M
Scaffold ID	Ga0181390_1001305 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11047
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (57.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11047

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (57.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F008281	Metagenome	336	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F036651	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_100130510	F008281	AGGAG	MNLMCNTEHGAIQWKWKDSGSPSAEYKSLNHQWWIPKKSDLELVTKVDASIRQEVKDEIWEDMQSDNEYQKSIYKLHKANKRES
Ga0181390_100130511	F036651	GGAG	MDIHLHEVGKVRPLILTKRQIRGYYKDYLTGENKVQTANREYTVRDSLTEIAYLMGEQR
Ga0181390_100130517	F012117	GGAG	MDILGGMSSSNESQQVYLAFKTSHQQFFANGETQVDFQYLQLDPATFKSGWGRYTKADGFEYAWDDKFGVVNPKPADDYKRAFSAWVMPQGAQHAYLWQRFTYAESSAFNSILGGFWNQMDASSSNLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRADGFVIPQWYIDQEAPVEDTFKSPNDGLADKVQEMVDKNELSDDDIPF
Ga0181390_10013052	F008595	AGGAG	MSNEENKMENQEPVIITFNGTEYRAADLNEDQMAIAAKLNVAGKKLARLQEAYDDYVITNEYKNICIESFDRAINVEDVAEVVEEE
Ga0181390_100130520	F002221	AGG	MKIYLDETLKDKVKELRICENETYVKWGNRKRIFKMIGVPFEIKFCRAEQMLKDSTINDSKQKQLKMVEMMLRAYEQLNIKCEESGYIQIQPNAKCFNFDNKTALVCDTDSDKPILEKIHKDEKDIMIFSIEELFRCIPSDFMRAKELLSKLDKSVNIKRVDYGKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181390_1001305

Overview

Ecosystem & Geography

Associated Families

Sequences