NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181375_1008401

Scaffold Ga0181375_1008401


Overview

Basic Information
Taxon OID3300017718 Open in IMG/M
Scaffold IDGa0181375_1008401 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1834
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066842Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0181375_10084013F066842GGAMNILEQKMWNLINEASPTGTDTGLGIITGDAWPDGLYTKRGERRYIVPASLTRGMQQVDFPASDNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGNSEVKANELRDDTPPLSPKQRMYGIHGFHRKQEYTIPPESANFYSTSETLIKPTTPPEGTVSGGVPATPE

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