Scaffold Ga0181375_1006039

Overview

Basic Information

• Taxon OID: 3300017718
• Scaffold ID: Ga0181375_1006039
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2168
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023213	Metagenome	211	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181375_10060392	F023213	GAG	MPFKVGDMLKYHHPLSADDEQLDLYHFGKDHLDGQLALVLEKSLTAADGTIDYLCYIDESRMWLDGEFLREVKEDEN
Ga0181375_10060394	F105880	GGAG	MRIRKRIVSTAISFLSMFLSAEEAKELFEELREIARGHKE