Scaffold Ga0181375_1001867

Overview

Basic Information

• Taxon OID: 3300017718
• Scaffold ID: Ga0181375_1001867
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F041307	Metagenome	160	N
F056907	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181375_100186710	F041307	GGA	MTDSKSDKTFLFCGMTSGYETRVEPLPECWLDMSKPAKTKYRKQKKTEYEALNAGALDFKTVGSKRYKKSY
Ga0181375_10018673	F021867	GAGG	MENNENVNWEKVNRGKVRYGFALELYKKGGILKPSEMGKIEGFVEYVMEGVEYEITDEGEPDKSRPRVMSVEECKEVVKTTTEGSEAFIKAMVHMDAEGLKEKDLDKVLEALDKGRITMDNLQDSLDRIHRIKESYK
Ga0181375_10018674	F056907	N/A	MSDNAYYIPGEAGSGPKLPTGEYEAVITSLEVAENVKCGGFIADIFKPVYRVVHSEYQNIDVKDNGVFRYKEKAGYSFKPSRNWGFAKLCGILGLDKEEEGKVTLPYLEFEMMNGFKVIIEISYKNFVNESGNPVRYPVATLKKKLGEVPF