Scaffold Ga0181404_1150804

Overview

Basic Information

• Taxon OID: 3300017717
• Scaffold ID: Ga0181404_1150804
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 561
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F022555	Metagenome	214	Y
F081542	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181404_11508041	F081542	GGAG	MNIFAIEGDEETGQIDWEKSAQSQDNLRVVKMILESCQI
Ga0181404_11508042	F022555	AGGAG	MAITPKFKPGQLVEYDHPANPLVGLVKSTQFARRRGDPVFVLVQWCNNRAQEEYIPQSDLKLVETL
Ga0181404_11508043	F006383	N/A	MWAVQQPGTLLRGRSSHQYGRLALVLEKAYPGPAPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN