NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181404_1011996

Scaffold Ga0181404_1011996


Overview

Basic Information
Taxon OID3300017717 Open in IMG/M
Scaffold IDGa0181404_1011996 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2276
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009559Metagenome316Y
F021299Metagenome / Metatranscriptome219N
F039389Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0181404_10119961F021299N/AKGLEWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPTKDKLGG
Ga0181404_10119962F039389AGGAGGLAFLGDLGKAFGLGSSKQVLGDVGGFIGSGLGIEGAGRNFGEFIAGATNDLSTADQPLEQSAVPTGDPKQGRAQETSRTGTTTTNIIDVTRGNGMQSTAGLGLLSPLLQQAGKFLGSRTGQIATGVGTGGFLSSLGGNGQMKPVLTQSRRNKAKVRQLVNFLGIEGAANFLSQSSGNNVTPNDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMAKTTRRSPATRRASSTTLIKN
Ga0181404_10119965F009559N/AMDQVLLYVSLIVASLSFFLCVYALARVGKLLNSVKGLEWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDEL

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