Scaffold Ga0181404_1005164

Overview

Basic Information

• Taxon OID: 3300017717
• Scaffold ID: Ga0181404_1005164
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3588
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F038198	Metagenome	166	Y
F105000	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181404_10051642	F105000	GGAGG	MMHQELKDREYYNGFIMNKSFRDWVKSCPKEYTWQMNEVTKNRGTYTFFLKEEED
Ga0181404_10051644	F013777	AGGAGG	MTKTFTMWGPTSIDHFKNLHDYYVKKKHAENIVHAYATPHYNDPADNPAAMWSFVMHEKRDLVRMAFKSYIHPQGDFYNGYDDICDIEKGTLDCDNMRLGEVFPVILYAHHETLLTVGCVVKTSDYPDIVTGEEQLALWIYYPSVENIESFDTASGHIYKD
Ga0181404_10051646	F038198	N/A	MALEKVTLKNVKVTINFDIDLDTLKHYIETKEADKDDVMAIYDMFCTHTARLVEQDEPDNIRAFFDIDPEDLNLIEEEIKTSMKFKTSFHPHLKRIK