Scaffold Ga0181404_1002105

Overview

Basic Information

• Taxon OID: 3300017717
• Scaffold ID: Ga0181404_1002105
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5758
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F009521	Metagenome / Metatranscriptome	316	Y
F015990	Metagenome	250	N
F022856	Metagenome	212	Y
F044193	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181404_100210510	F004603	N/A	MIFSININGNIVDWCYTIDNREKQYHKTWIPKLRDIQIITKDLNGLTIGEVKKIILEDIQPDINMVKEHNNKLARARRVNQ
Ga0181404_100210513	F015990	GAGG	MTGKGSGRRKEDINKIRNNWDSVFGKKKKELITEVTIEFTMQGNPNINDMNNQVEKMLKENKIVYSTVTKYINA
Ga0181404_100210515	F022856	AGGA	MTLPNKIVGNFRDILGNLRDILGNERVNTREGDAHISIHIHMYKRAIPFRGIDSLESAHACAGER
Ga0181404_10021055	F044193	AGGTGG	MIIKEYQKEYKDYFMFITVHHSLIEVSVHSYVNDDFEYRNRYIDYSVDEIYESICYRIDNNDLLEVA
Ga0181404_10021056	F009521	AGGTGG	MKYQIIINNGSLKGFIAFKGSCLATMQDKYKRLEQQGHKLKLIRGKQ