Scaffold Ga0181404_1000120

Overview

Basic Information

• Taxon OID: 3300017717
• Scaffold ID: Ga0181404_1000120
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22677
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006940	Metagenome / Metatranscriptome	361	Y
F029124	Metagenome / Metatranscriptome	189	N
F069469	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181404_10001201	F029124	N/A	SNAIPQTTIESLSFTPQQNTSLWPKALGLDIGSFVEAKVTTPSSTVETYDLFIERVKHKVSATNSSWNWSIGLSPAETGAWILGVNRLGIDTNLSYT
Ga0181404_100012034	F069469	GAGG	MKIKILVGSDYSDGKKEIRVESGKVVDVPDKVARSLIKNNAAVKFNSKMMKEEEE
Ga0181404_100012037	F006940	AGGAGG	MKRLKLEDISNAPSLPEREIEIREWDASVIVTGLTKADSVEINEVSTVEGVRDEVLFEKYLLLKGLIDPKFDDIEHIEELYQKATPAIVDKILIGVYKCMAWTKEDQRKISDQFPEQ