Scaffold Ga0181350_1046094

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1046094
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F047054	Metagenome / Metatranscriptome	150	N
F058143	Metagenome / Metatranscriptome	135	N
F093863	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10460942	F047054	GAG	MRSGTNLMDNTHSQDLIDDNLKYTLRPRIKDRTKVISAALQYVLNNDLVNKSYLEKIVQELEEMNEXLI
Ga0181350_10460943	F093863	GAGG	MTNLINKLLAKFNLKLVCIKPDVSLVEASVKFLNENPKFVSDQVKPNDFYWGDINYVQKRVDDEFPQVSGETYYKSQPSQYEKYFCDYNADEKPLSKEDLKKIYDETTFTTEQLKNKLKX
Ga0181350_10460944	F058143	N/A	MILERTADLQILTDDTETYYRISYNDEFPYVSWFRREYGILYPVDTELYDILTQKHFEVS
Ga0181350_10460945	F018714	GAGG	MTNTEYYKTLVIGGIVAASFTILAFYMLKPENHTVTPKTNFAVVDTYKDCKVIQWTDGMQAEFKYFLDCSKXKNSVKIV