Scaffold Ga0181350_1029832

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1029832
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1505
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018366	Metagenome	235	N
F028739	Metagenome	190	N
F088535	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10298321	F088535	N/A	REGGPQWAADKMRSFSHQELMVENPDAFMAENYRVGRSIRGEELIEVSMDDSWIPWISEGKAPLSWYRRR
Ga0181350_10298322	F018366	GGA	VDPVDQRREGSVVVVPSPVAIISPFEQNYWDRFGTAFIESVEGLTVKPQEVILVTTARVDVPSWWKVVPYWDDRIWPCVNVGVREATAEWCTHLPVDDTMDPNFFDGLVLQGDAVNVRGRWDGGSCYGTPEQYQNLLNMQNNGMPGLAVIRRKTWLKIPYRSHKYVDWIHWCEMRSHNVDVSFDSRCVWTWVRHDDALTAQSDHQAEQEVFEFCELLKSGRVIPGEDWPPKLGE
Ga0181350_10298323	F028739	N/A	MILQDLKDRHSGEAVWVCGSGPSMGWVTPQFFEGKTVVAINEVGFVFGLENFYTATNYSTHHPVVAGNVAANPHRIFITPDMDLEADDMTATHVGSGNHITFRPHAPFWKPDTNWPTDPDVLITGGTSAHIAMHLACYMGASQINLIGVDLGLLDGQENFAGYRKSNGSMDGWRQQFGVVVNKLCELYGVRFFRLQPSLELLVVE