Scaffold Ga0181350_1026444

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1026444
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1609
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F018719	Metagenome	233	Y
F039482	Metagenome	163	Y
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10264441	F004450	N/A	PTFQPRTAGDSEVWEETMNWVAAGLIALVMSTAYLLDGPSEHEARVDTTEEKIQKMCGENAGWKMLADGSVQCFTHRGFKTRKVTL
Ga0181350_10264442	F039482	AGG	MSDKLELTEHTVYILNGIKLLPHYTMPVFVTPGHTKQTPMKLWTVEELKDAGAVESSAFLWPRHTLASGG
Ga0181350_10264444	F085065	GGGGG	MTKQELLNLLKMLSAIESAMSINRATLPSYLFEQIDAAVVVLEREILNDAR
Ga0181350_10264447	F018719	AGAAG	MTPTFNTWDRATLDKFALEAYLRLQQQQDQLEQLRGDLRDAIEAYRAVMRETASSHRFGV