Scaffold Ga0181350_1004892

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1004892
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3884
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020493	Metagenome	223	Y
F062766	Metagenome	130	Y
F078231	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10048922	F062766	AGGAG	MKRYSDEWWQGVKDFNNSFPINIFKKDKEMTANEMADTLELKLDRSDSYGSPGYEDFELSSVLSEANSLYVKKYFDELNNRKGKGFQEIEIRDQGLGALILDAPSLVSSASQVGVIVNPNVVGKFFDLPLNHMYTIYEECTIDKIECGTAETSIVAYVTPIAHTEMQRFNWSKYKKPFYNISGDSRVWRSEFSRQVTGINPASPATAKRHEMFTDGSFNITAYHMRYVKNPENIVVDRNTPANQRNCELDTSTHIVIVDIAMSLMSDRIREQRVQNIEQFKELE
Ga0181350_10048923	F020493	N/A	MRKQMFWCIAMWIVFCGFLIYLTELSRKEEVYKLNCELLMGGWHPDIPKEFAKFCEEAKRTMRSDR
Ga0181350_10048928	F078231	GAG	MKTEPELIDIFAMFALDRLKPVKGMSKIDVAYEAYEQAQAMMEVREDFINKRSE