Scaffold Ga0181350

Basic Information
Taxon OID	3300017716 Open in IMG/M
Scaffold ID	Ga0181350_1000893 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017716 Open in IMG/M

Scaffold ID

Ga0181350_1000893 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8810
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8810

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (35.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)	36
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F063343	Metagenome	129	Y
F079651	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_100089310	F014837	GAGG	MIQRNINPKPRFVTLTSNPSTGALVGVPLATLFNAAFFRFPQDSIIHYVMVNSTLTCNGAASQAIGVIAYGQGNQTFGESFTAGATNFADSVLWRDELLNPAAGVLSDSKSSQITMNEFFVHTDSSIGIYVNGINASVLINATIAFNPIAEWVNFREPTTGARI
Ga0181350_100089312	F016141	AGGA	MSPEILDSLQKRFGSADFSRYQVVRGQKYDFCRLQAAGTNSVSFFSNPIGSSDPAAPTVFKTLEQTNLVKNASFGQEYFALTQIRTYINFVPQARQSFTPGSNFVYRGYTALTTSAMEQLQTVMNTGVLEIKFAQKLYYQIARPFVQCPPGFGIDVQSLASCRTGVAETQVSDTNWLVRPDYRAASVYNIDPIQIIEPEIQIQAAINFPNGNTPSFTGVTLTTANDSVGLVASVELGLIFDGYVIRPSQ
Ga0181350_100089314	F079651	N/A	TRRGRKSALIVARNPRRRRRSYRMNPFGGNILSHVKGVFSRENLTVAGGGVAATILTNYLLSMTKTDKTSVLPMGTTAETQKMARIAYAVGIPVVGAILTRKMNPSLAKGMVFGALINGIIEGIKGYAPDATKKALGFAEYLEYTPMSAVGMTPGYSAINQFSNIRPMNSAFSNSSAFPADAWGR
Ga0181350_10008933	F063343	N/A	MNYLILLGILGLFVLGQKTRPNWVSEIKSTLIKLMVPGADRRLFSEFRQATFSWIRNPASWVRVFDWTGYAAGINGLGGVGGGTLISRRHVLLANHVPYPNKPNGPFDIFFLNANSRTFTYKVTNIQQVGDTDIAIGTLDRDADPSLNVYRVLPDNWTQYIANKAESFNSMGVVGTNYAFVLPVLYSGQNRKVSTADVVNISLGLAGVNIPAFEVARAFGDPIIGGDSGNPIFAMLGNELVLLGAWYTGPYRGYTVGTFPWLLDQKSTIEKIMGMKLQVANMSGLNRIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181350_1000893

Overview

Ecosystem & Geography

Associated Families

Sequences