Scaffold Ga0181350_1000083

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1000083
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28148
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027415	Metagenome / Metatranscriptome	194	Y
F040944	Metagenome / Metatranscriptome	161	Y
F086585	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_100008315	F040944	GGAG	MVHTENEHLFPTGGLSIPYEVGHGITLASLIDSRDYLQSELDQWNENPKDELNPDGYWMHPDDVVNNGTLIRAMNLLIGYYGG
Ga0181350_100008317	F086585	N/A	MLNDENLIEISRGVDSYLSTLLIKYEVTPLSLAAILMARAMVLNKEAGSTEDFLKLLSSISQNPPMNPYEKTTH
Ga0181350_100008346	F027415	AGG	MMVLGKLKGMIMNDNVFVSCVTLAIVTLIGSITFYQYSELKSVERNVESAIVKGIDPVAVRCAYANQSDVVCVAYAASHQQGFPTPKSSK