Scaffold Ga0181350_1000001

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1000001
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 364576
• Total Scaffold Genes: 669
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 464 (69.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F058120	Metagenome / Metatranscriptome	135	Y
F071209	Metagenome / Metatranscriptome	122	Y
F074429	Metagenome	119	Y
F078676	Metagenome / Metatranscriptome	116	Y
F082643	Metagenome / Metatranscriptome	113	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_1000001155	F058120	GAGG	MTTNIDIGVALLESIKSKDAQQALTQVQQFSDNMRNVTVGADYVMWITEPVNLTSVHKALAEDLAVPPRLLAIRRSAMSRTQKGALLVQAMVLAIKRVHNL
Ga0181350_1000001175	F078676	AGGA	MPIQIHGAASAMQNLTADLQYYICYASSPGAFTDPNPNPPVSQELARLVNIQVTGNPLDESQKNFEVLLMSIGLRAMPVTLADPVAVIQLADYTLELSGEGFIWKFAVERGVQFYNFTPYGEPGPVGLLVDDLDGVILPSGVRVTTVNGSPTGWAKNIAFSRTGSI
Ga0181350_1000001226	F055453	GGA	MINSIMKIKDILNESATDIVARFYKEASKDYDEFYNPDDVKYKKKNAEYYDEHFKEWFKEDVVPVFTKPVDKPQAKYNNKPEGTKLQSPGFRGLQYALAHAGLPYDHHVQKYQPFAPAVMSSEMDGAKNNNGQ
Ga0181350_1000001230	F071209	AGG	MEKQDLYVPMNELIRDKETSWTFTNINLPYYEIAKRGIVMWCVGNLEGRWTMLGGNKFGFEDGADATIFRMQFGW
Ga0181350_1000001240	F097281	N/A	MSKQETKTLPVNLKEQNASHTFRVVIRDREHFYKLVKWLNENVGKGADKWTMEGRVLKRLKTGTVNPNIYIFPQDFDPASALYLSLI
Ga0181350_1000001372	F074429	GGAG	MAKKVTSFSFDKAINRIARPSVFDRIVKEIDAKEIPAKYVEQILVQYYDGNVVELSGNEITHPIPMNRNAQWAKMEESFKRMRDVKVFINTDVLEEDINELVEKYLGSYC
Ga0181350_1000001606	F082643	N/A	MDYPYPNYGVRTTEGYVALGANVQAVVNAINTNTVVPYGDYGGPNLYWFQTMNNGLGNIIYTIFDRDTTLGLASFSVRYGAASTIQQILFEQYPRSQIDLQFLILPHVDHPLPTNGTVIG