Scaffold Ga0181370_1047987

Overview

Basic Information

• Taxon OID: 3300017715
• Scaffold ID: Ga0181370_1047987
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 549
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 310

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016208	Metagenome	249	Y
F030565	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181370_10479871	F016208	N/A	KKNQHTYGLLLRIIGSLMWVYITAPIGAFVVILGELVTWIDFDE
Ga0181370_10479872	F030565	AGGAG	MDWIYAIKVITLVLCWINYGIVLYRSKWDFGDTSNIGWLMAVLGWTNVVVL