NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181370_1008129

Scaffold Ga0181370_1008129


Overview

Basic Information
Taxon OID3300017715 Open in IMG/M
Scaffold IDGa0181370_1008129 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)310
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016410Metagenome / Metatranscriptome247Y
F016673Metagenome245Y
F067830Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0181370_10081292F016410N/AMRKFSSKKEQLEWADKLLRKLSQKNTGGVTPIIKKIITEEYIRRLKK
Ga0181370_10081294F067830GAGGMSKPKLTIVDTIDGKTLAYRIQPSVEIFPKTKKVGFTDYIYSYKEVIAIGKKLEELL
Ga0181370_10081295F016673GAGVIQVTVYLLMISESDTEDIVIKSYVELYLKALNESRYYKFIKVIKSRMLELIKRKQLKK

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