Scaffold Ga0181370_1000697

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181370_1000697

Scaffold Ga0181370_1000697

Overview

Basic Information
Taxon OID	3300017715 Open in IMG/M
Scaffold ID	Ga0181370_1000697 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4682
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.1	Long. (^o)	-70.419	Alt. (m)		Depth (m)	310
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004463	Metagenome	437	Y
F011090	Metagenome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181370_100069711	F011090	AGGA	MKRIKHNDLTHYFLRPHDRLPASYLTSCEKFFRELGKKRNKFKASSSNATRHNLFTEIEERSRKRQAASNKRQASSSLE
Ga0181370_10006972	F004463	AGGAG	MNKKTIKAVERRLLKTMMEDEKNLRRLLETETNGVPERQLDGLMVKIEQLLGRIMVNQNKLLLLQDITDE

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