Scaffold Ga0181370_1000670

Overview

Basic Information

• Taxon OID: 3300017715
• Scaffold ID: Ga0181370_1000670
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4793
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 310

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077175	Metagenome	117	N
F080485	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181370_100067010	F080485	AGGA	MIVNRIIYKNQPKEAIFRSLVTDFFNNNPDCEVATISITKDKPKRSDAQNRLFHTWRDIIAGEMGESKEETKNLIKNQFSIESTKDLEVAEFVEFLRDIDDFFGGEYQIKLPRNEDYHLAMYNVYKKS
Ga0181370_10006703	F077175	AGTAG	MNIEQDKLDLWAEINKLSIQTQRMVNSLETLTDLLKTLEEKINVLERDVHWRNN