Scaffold Ga0181412_1142079

Overview

Basic Information

• Taxon OID: 3300017714
• Scaffold ID: Ga0181412_1142079
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 543
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030928	Metagenome	184	Y
F053545	Metagenome	141	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_11420791	F053545	N/A	IDCPMCEEEFMHMGGKVTTHNGFVMLPIEQTRKNVEGGRESIARWSGETLPEKGE
Ga0181412_11420792	F083388	AGGAG	MVGMLMQKRIANIEWVMKRCSPEFKDVWERKLEQLINRRVEMAYERMVERARSIH
Ga0181412_11420793	F030928	GGAG	MKEWLKELEAYTSFCIMGFTIFICVIVIIVNCRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD