Scaffold Ga0181412_1012171

Overview

Basic Information

• Taxon OID: 3300017714
• Scaffold ID: Ga0181412_1012171
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2565
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F015990	Metagenome	250	N
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_10121713	F015990	GGAG	MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVTIEFEMPGHPSIDEMRNYVEKLHKEDKLVFLTITTNA
Ga0181412_10121714	F087206	AGG	MSNHYTEQHNEQELENIQSYVLEQDRKGLLEKQITDMVITYGLHPDDDRDAILEHIAESIFYEQTIGDLV
Ga0181412_10121717	F002399	GGAG	MTIKTKIHKSIIGQLRKKYGLKDNTPIHKVEQIMTAEDWQAFSEALTFPNGKPTQRGK