Scaffold Ga0181412

Basic Information
Taxon OID	3300017714 Open in IMG/M
Scaffold ID	Ga0181412_1003088 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5842
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5842

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022895	Metagenome / Metatranscriptome	212	N
F068898	Metagenome / Metatranscriptome	124	N
F097404	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_10030886	F068898	N/A	MIASKSEIKALAFSNTFDINAVKDNVIQIVEWEQVMTVLGTDLYDDVVANPGSYATLLSDYLKPYIAYNLKAYISKPNHIKTGNKGAQTAQGSNEVIANVEEAKRQAMAMATRYKKQMIAYLDRTKPLLWKGEQDSDGIINKIIIF
Ga0181412_10030887	F097404	N/A	VQKKNQKKQRSQQRQINFPISNNVIQLPDYTEKEKIITKQGIRLISTTDNNLFPQKVSKLAKESSTLKSVINSFAEYVSYGSILTENQALESKLIDDLNKYYNWFELSKRVAKDRRTYGYGFIESVRIGGEVFIYHLDASKVRFCEYDGEHPEQVAISKDWNDNRIHPIQRTLFPNYDEEGRTIIPIFEYESGQNDYPLPVWSGAFYDAQVESLIGQYNANQFENGVTLSSILMFDFGDVTDENGEDGLKDKKYKLEQNIKGTSGGRSGKSLIVPKTGDVQPPEYVTYPMNKEGSFMDLQKMVENNIVKACSWFRSLAGLESAGALGNNQQLRNEWELAERLIQNEQDVIMDAVQKAFEGTIYEGKVEFNNQSPMNVVNDLSNITTLLQNKETIGTEAVKELLKMMGMDEQQAKIISDNDSE
Ga0181412_10030888	F022895	N/A	MAASLSLAAVAGTNCPKTAGVKELYTIPVGDMVSVALGSDHDITNLVFAGVGNGFGKLNFKRGECEVTESMERSNEVSVNFAVANPTSTQRKELTAIKNSCEQYMVARLYDGDRLLFIGYDEESLDEGFVAFASFESTSGRAKTDDNLFSMTMTAEQGEPLRVLSGISGASTPATTVTAIVAELIAATSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181412_1003088

Overview

Ecosystem & Geography

Associated Families

Sequences