Scaffold Ga0181412_1000313

Overview

Basic Information

• Taxon OID: 3300017714
• Scaffold ID: Ga0181412_1000313
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20867
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F013249	Metagenome / Metatranscriptome	273	Y
F032281	Metagenome / Metatranscriptome	180	Y
F093868	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_100031315	F009463	N/A	MDKLQLTDILEGDYSKDIHVTNDTAMYDPLNEDGENQDGVLKYNTTIDGRKYKVSFDVNKNPTKKGIKVKFFPLNDQGIEIQTPSEEQIAQLQNDVATRLAPKFNDYRLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK
Ga0181412_100031316	F013249	N/A	MAKRKLLNLRVVGNSEKLLSQFIDKNKSYIFKETYAGIKHAIRQNKSIAEICNVNTNSATAIIPKDGWENALSSSLGYFESIDEFEMCRDINTTLKTLRNVKRSTLLSKTVSGSVVTG
Ga0181412_100031317	F012129	N/A	MSKDPLYSLKQSLDQLLQADTSIKRKNKKSYDQKRDLFINVINQFEAAITKSYLLEKDFKIDMSKYEENFYQIIDSLILLSFGKDVYELLSFYFYERFNPDGSENGLIIEETGEEVFIKDALELWGLIIKVQPDIFNGKIR
Ga0181412_100031322	F093868	N/A	MRKLLLLLTLLPSIMLGQLTSSVDGIDIDLVYSGTTTDANKALSKVQVNDTIVIKLNLSNLSSNTITYVHVDVQYNTNAYARVGYEFNVPTGAQTSNGNWSGNGMKWTVNPNYDANDLWAQWSTQGGSYTEVAGWEVDHVEAVSLSGISGNYATLKFKVKDAGANHNYTDNIVFTMARITDNTGTSPYVFPVGKVRGYDTMSITHIPLEDLDSNIYIKADANSNFDVTKVGVVVQKNGSPVSNNLYFDSGGQINVTDYITTSTDSYTLDFVTSYNATEWEALLDNIITISDVTLTLNELGKYGHGNVGTVFTTGIQYSAVDSNNDRDLTPQDAYNLLGHVMGSIDIIPDDGTGIFNNSFKPIKKTDYNTWSIYKFKNNVTEPNHSVVHPITVDFSQSSYTEWFKFGFIGDANGSHSSPVDGTDASSLTARSNNNYTISSAPVMSYGQQILADGIIQGEWSTAIEDGKVVATLRLLSTEVTALQLKVDYDNTVLTFEEAVFNTGNTVTNFASETNGRVNLGSIEQNGGEIDTGDVFKIYFDGNVTSPVGLVSIFNTDAANTDGNRLILNLQ
Ga0181412_100031323	F032281	N/A	MKKILLILLIIMGCVKDEYSDFQTLYPKLTDNMSINELTGLKFQGSNITDKSKFNLKVLEAGEYSIEIRDYFKNLTSKSIINAKSGDNVLKFYTRAFQDGDYTISIGKDGQEIHNVKLVI