Scaffold Ga0181391_1012909

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1012909
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2138
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084716	Metagenome	112	Y
F090500	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10129095	F084716	AGGAGG	MTVVNFQTAPGKWWSKDMKYKVPKISNKTEKGKWLNGFVKKFFVAGNHNFRFSTAKNYIHLQTTHFNINNTKYALVNFFKNIKKLKQHHFDNQVFSSYLVYQQTKEAA
Ga0181391_10129096	F090500	GGAGG	MYDTKFSKKGKGKLLTFIFDNEKFQMTDTVNEHGCPDKAMCAANDYFFLPEGAWFGPQDGSAKDTWVWQKGNFFD