Scaffold Ga0181391_1010613

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1010613
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F032856	Metagenome / Metatranscriptome	179	N
F049006	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10106131	F049006	N/A	MTQLEFIDVCSRHGVDQWIVMDDLLLNGKQHPHDLTVNDLNEFMWSTY
Ga0181391_10106136	F027054	N/A	MTKQKKETSRHWTVELNIGQLKNMAPLKHSKRIGYYHGTHNLNQVRRTVKKRFDGGSGECVKSMFQFQGEYNDKPETSFYIAFSFYGGIETFKDDSGLEGEYMTFADRKILEDKLTILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFYTFGYHKLSSFDKLHSGTTTHVTNTETVG
Ga0181391_10106138	F032856	AGG	MDEAKYRYWSSVYTDYLIDDISDELVNEYEGGANVADEFIVEEEYVRQLIEYWIDNYTMGNHKCKEIIDNLSYDIFEDDDEFGVRPDGWKQAGVWALDHALP