Scaffold Ga0181391_1008486

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1008486
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2686
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070651	Metagenome / Metatranscriptome	123	N
F072842	Metagenome	121	Y
F087771	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10084867	F070651	N/A	VLWRESYMINTINNMKITIQQTGKTYITQDNDEVKVIHNHDSIINIGSGYYKNKLTNEWISEDEYYDSLCLKMEEDESNKYY
Ga0181391_10084868	F087771	N/A	MKNENIKLLIQLEELLKNHDWYYAMSDDHYYYTKGRKQSDNIQQTMEKLNNNNCSVMARELYDKYYK
Ga0181391_10084869	F072842	N/A	MSRLHRELLKQQLMNYDYSNTPVDKSILVELDYKQITVSTEGPEGFTHWRSSGGELGKLIEMMNTQVSRHPEYDLIIVDTI