Scaffold Ga0181391_1006227

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1006227
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3169
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10062271	F022856	N/A	IVGNFRDILGKLRDKLYPQMPNTRVGDAHISIHIHMYRRAIPFRGIDSLERAHACAGER
Ga0181391_100622710	F002399	AGG	MTIKTKTHKSIIGQLRKKYGLKDNTPIHKVEQIMTPEDWQAFSTALTFPNGKPTNRGK
Ga0181391_10062276	F087206	AGGA	MSNHYNEQHNEQELENIQSYVLEQDRKGLLDNEIDYTAFAYGLHPDDDRDEILEYIAESIFYEQTI
Ga0181391_10062278	F035770	AGGA	MKPYKTITFAMAEFSYAKHLRDELGHTGEIIYPNKDTSKQQTCGTWLLLTITGERLGTVSPNGTVRLT