Scaffold Ga0181391_1003511

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1003511
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4325
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031261	Metagenome	183	Y
F051470	Metagenome	144	N
F055270	Metagenome / Metatranscriptome	139	Y
F068823	Metagenome	124	N
F091841	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10035111	F031261	GGAGG	MNRTKTYVMSVEKDSPAVLEQLNKLQEVRQGVRLLNRHSRRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYEK
Ga0181391_100351112	F055270	AGGTGG	MELLHKRDFNYYDHETKTVDMVRYIKTIMACNPLETFYYLCLDNPSEFRQALSEIEYLYSKELYCFVYPPKDYIKYKQGKEILKKIV
Ga0181391_100351114	F091841	AGGAG	MEYKIIDWAYNRMFPNKTFKTSQDAFDFLLNELEEEELQDAFVVDIKTRCYLNGFWSTMN
Ga0181391_10035112	F068823	GGAGG	MSRTYNEYYFEKEDVMKALDDIGLLSRLLRIVYDEQGLDTIEYLVNKKANRKFDWLNDYMMRDIINTVEDKDYEQD
Ga0181391_10035113	F051470	AGGAGG	VSNDNKWVHDYYDERWQHYYDVLTKDIKDIGQVEAMCDRMAMEDVENLEMEG