Scaffold Ga0181391_1001883

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1001883
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6032
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F014804	Metagenome	260	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10018831	F008782	N/A	VFVSYEIKNKKSVTRKVITGTLDTFVLTSDINEIKNDQELIDRICYINKKNPNKVDVTITSVEIENQYGETTDRFEDEY
Ga0181391_100188312	F018080	N/A	MEYLEIEIFNHFLKTYTYIIWNKKHLLGEIVEDDIMKMLDKEQLIDFYHMGKTKFKIEKCKIEKYLTI
Ga0181391_100188313	F014804	N/A	MENSDWLDNVLDGEPSSITDTQWLIIETNIDQTSLTPRMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGDRDF
Ga0181391_10018833	F024889	N/A	MNSVTIGVLMIVGVVILYIFALCYVERKIARQENESLERNIDKLDDKAQ