Scaffold Ga0181391_1001343

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1001343
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7264
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F008022	Metagenome	340	Y
F022645	Metagenome	213	Y
F072518	Metagenome / Metatranscriptome	121	Y
F098055	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_100134311	F098055	N/A	MRSACDEETPHCPWCERPMTIIEHEFCEICDECREENELN
Ga0181391_10013433	F022645	N/A	MKNTNEIEKQLQHKADNYIEQKAKEMFEIHREIAQYLGGRLPNYIDYITDYSEYSNDLHANRGKYFTSSSPSAMQLKYRQDLAKNYKEKLVAKYTRELIMKLDIFE
Ga0181391_10013434	F004523	GGA	MSTEIKSAREANTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPIRFATYTTGYVRNVTEGLASSYQINKTKKVSTRTSGYAYDTVERILIHSWEERIIYLAKFIIKNYYRKPTYMMSDYVMKCLREAYVRDYNNQPSNRQPFGDEVSFDEGDMHSPDIKVIINGHRYNLS
Ga0181391_10013436	F072518	N/A	MTKLRVRYKNERTLKQLLSHAEEQHNHYKEYGFVGDMKYWQAKVHDYKAQLYALYHEREEFDKLNTI
Ga0181391_10013437	F008022	N/A	MTTTELQVKIEALQAALETKTQEQNAYRGQIDTLKKQLADLNKPKLTMLQFDELTELVEQGIGEFDFDDLDNYSIDYGIDYDNRVTCESFCFDNADELARVICETVYKMFAEANEDDNQLNQD