Scaffold Ga0181391_1000719

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1000719
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9995
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040332	Metagenome	162	N
F052945	Metagenome	142	Y
F056901	Metagenome	137	Y
F094391	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_100071914	F052945	N/A	MGVSMKEIKPDPLVMNLQPWLLNRHLAKPKKNYLKHRLLLVGIVLALSLALVSFVKYSQRDRVAMHDKGFNTAVFFYLHSNSGYAKENKNG
Ga0181391_100071921	F040332	GAGG	MYRTPTAMDTGEDSFIYAAKILKGKINRNSNSRVQITLSTDVAIKFLKDNPHLIDQYDKPFMVRTKLPEKFKFINYLKQNTSIKELVKNTSIPKTKIEHWFRKDQCFSYPTIEDWNTIKPHLKEIKFDEELTFEVEQDWKVNG
Ga0181391_10007196	F094391	AGGAGG	LIVTFQKNLNTGYSNHKKDCEYKVPKISNNTDKGKWLNSFVGKFFTGSHNYNFVGKIHLKLKTTTYKMNNDLSVMVAWFKNLKKLKQHHFVGEVFNAQLYRENLKEAA
Ga0181391_10007197	F056901	N/A	MVKNFHKKKFTTYSALEKYFTQKILPQKNKSSKVIGKTLLVWDKPKKEAA