Scaffold Ga0181391_1000588

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1000588
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11079
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005218	Metagenome / Metatranscriptome	408	Y
F015999	Metagenome / Metatranscriptome	250	Y
F085545	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_100058810	F015999	N/A	MSLNSFFDSIDTDAQFDVWKKTITQKLVHLKNTIPIENRDELNYVGETLEFINSLNLLSSDFLAHHPNMDNKKTLTKRLKTCNSFYRKFGNL
Ga0181391_100058811	F085545	N/A	MVNIDALLSEWAYRCKKGYPDMDSPSDLMVLKTILKEQEISLPEFQEQVINEQEGKEISIKDITDILGQIKDDQKALDKIYKFITNRPGEKGFFGVATDSNVTDKTVDTSNAPQVIFDLLSNSGDLKNYIEFNKPGFSDIGKEGNFLDFFEGKSGMSKDTLTKMFTFSGKESGRGVGKGEVAMALLFKDVKMAVAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLATKYDKSDAQFKTLIPNLSDEEGLDKKELLDAVIDFESKAHPKGDAKKYFTEGMLDNPIEIRKAFTKNLIRHYSTSKNIDHFIWWNSNNKFGKYISFSPDEADELVDKGLLRTNNAAIYQLDPSISKP
Ga0181391_100058813	F005218	N/A	MANDKFYGYKPKKEENQLGWQNNSMGQGTRLDRVNPYEFKKGMYVELGKLGTSLRESEADQREKATETVLKNLKDVPAYYSCMEHYEVITRNMDRKPSFKSFLKEMGDHSMKEVKEKFTVDKMKEIKLKESVRAEVKNILKELFKIK