Scaffold Ga0181391_1000506

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1000506
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11762
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009993	Metagenome / Metatranscriptome	310	Y
F013946	Metagenome	267	Y
F046648	Metagenome / Metatranscriptome	151	Y
F050398	Metagenome / Metatranscriptome	145	N
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_100050610	F009993	N/A	MPRLLKYSTSGIIDDVPDQALAVIEHATLFYLVDQNFKGMNKFLAFAVAGAGYEVFIDNIKKRNVPEGFSTNNK
Ga0181391_100050613	F059991	N/A	MSNPQLIHRANENSSLYNTIKARNSKQDVFSYVNEGELNVCPYAKSRVIVNPTTSLNSDGGQTIKFELPNFGLLEDMYLQTEFARGDTNADTGAKDCFLVDMAGAFTFSKIRIVYGGNTVFETTPEHLVVSLYGRATREESLVLDAMLGSAIVGAAADSHSALEGRMAMASSFGGQKLSCPLKCWFSESLGRNFDLYSLSQKCFLEVDYRPILDVHGKAETPADRITYAGSNLVCYLNELSPQETARYQSINYAPGTVASQLAYTTTLLSESISTPVVATATTKGNVVKINSISGLVRRFYVFCTADADRASTTAKAYMNLVDISSLKLSANNQTIYEIQDCGVGIDNLNRSSGNGYQTDYFVEMFHNKLVGPCNSTVASDTFKLMDVGVDKSLGATTGDEFEFGKVKVINFGKNPNDYSSADGSLALSQINVPELELKFPTGTSSAHTVHVVAEILTLNTYNTSATGQINFKSISE
Ga0181391_100050614	F046648	N/A	MVLLNFSFTGENTTGQATFTLIQEYKFKNIYLKDIKYTIANDKLEEKISAMTSNAGLIADATITSPLAIHMDFLDSKDCVLYSFADGSGETLNTAQNITGLIPFGNAGKVLADSGKVSDPSTMSHSYPYHLVINRPQTWAVGKVLVFTLYYRDVQTDGIIKDWAVMSGTTDAFSDICSIDITLQLE
Ga0181391_100050615	F074141	N/A	MTEECSDFKDVHYANKNKKLCSYCSYRLAIPSKNHQYCSEICRMLHLSITKQINIEDIANLIKLSKVDLIHIILTLKCQDITLEGVHTILNKPYEYKQKILKKEEGSFLVNFD
Ga0181391_100050616	F013946	N/A	MDSQSIIDSLLRGVMISAVNRVVFERKPVFSMGTVNQGVRLGAASVGYDLVVRPAVKQVLPQIPLPNGSK
Ga0181391_10005063	F050398	N/A	MPILNFSIRSQDIDFKDVANTDTRQAQKTIKLEQGLKLKYLKLLHIYHNLNTANISNEEGTGNNCIIFCKISFLNAKNSLFLETTEGKTIEHAGMICLGESVQDVHSCVFKDLYKVLHDGRQLLFINQPFTVSLFKLVSKDPSDATNTDISVYNSTESHKIVPITIHELRGDLAGPGQFLSLTFEYQEDEKK