Scaffold Ga0181391_1000439

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1000439
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12660
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064880	Metagenome	128	N
F085895	Metagenome / Metatranscriptome	111	N
F092352	Metagenome / Metatranscriptome	107	N
F094097	Metagenome / Metatranscriptome	106	N
F095740	Metagenome	105	N
F103549	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_100043912	F094097	GAG	MTKLSKQESQGIGLPLNTSLITILRECEEKKQVQMALSGAMYGVANMYSDVDIKALTATMDAFYREFQYEPLSVFIDVINDFKTGKVKVFGRITPTQIRESIMDKLDKIARERENTHLDRKGDAGTRSTLTLREALAKVTTQK
Ga0181391_100043915	F085895	N/A	MNVDEALKLLEAKVEDDIHDLTPKDRLLFWANLLEFKKAKIQRIPFLVPENDAKIIIQYEDYKTEAHASISKPVDKPKED
Ga0181391_100043917	F064880	AGGGGG	MKRFKIHYNDDIIGGQIPDSWEELTVKQWAALRPNVSDLELLSVLSGIDLGYLENTEADLSPAIEHVYQSIKDMPEDLNHLARKPLTILGHQIKFPKDINFARYGQKAMVKNAIQGAEDMREIVSDVIAIYAQPSIDGKFDSAKLEPIKKAVDSLPIIMAWPWVVFFLRKLNALRRTYLSDWKQSQ
Ga0181391_100043919	F092352	N/A	MNIIATTLKSIIEGQGLTYLRAANPNDLNELVGSYDLSNGVGVYANLPTVTNITYGQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKADGMMDKLNASGIIALSTYIDDYELEAIESINITSEVLSGWKLSFSIPIFRDTFECA
Ga0181391_10004392	F095740	N/A	VEEWFKDWPTLLAALGLGGSGSILGHKLVDKEQNKRLSKLETKVNEIDGSIKLNDGVDKQFRASVETRLSSIETSLSTLTNHLLNKKNESP
Ga0181391_10004396	F103549	N/A	MSCAGIFEGATVSCADPLAVGIEQRLFLANLEDVASFTFDGTDTNMVTGITMETGKTFFEFEGLKQSISCQSEFVPKPFSTAYKHTVDFSVFNVTASQRRNLEAMVFQPQVAITFGPNDSSLGNGAFEIHGINAGLEVVTNIRIPADNETGGAYRIQLATPDAGGIESQLPSVFFSTDYATTLAALVALKS