Scaffold Ga0181391

Basic Information
Taxon OID	3300017713 Open in IMG/M
Scaffold ID	Ga0181391_1000323 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14207
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14207

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F034713	Metagenome	174	Y
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10003235	F034713	N/A	MVLLTFSFTGENTTGAATFTTTKEYKFKNLYLEDVKYNIFNENLENTIDKGTANDGLTSVSTLITSPLGLHMDFLDQADCVLYSLGDGSGETLNTAQNINGLIPIGYAGKVGSQPVSTRNTMSHSYPYKLISNRPQTWASGKSLVFNLYFRNVLTDGIIKDWALMSGTTDAFSDINSISITLRLE
Ga0181391_10003236	F074141	N/A	MLCIYCSYKSAVPSKNNQFCSEICRLLHLSVSKELNVEDIGKLIKLSKIDLIHIILNLKCQNISIEGLHKILDKPYEYKQKMLVKNQGSFKLDFS
Ga0181391_10003238	F059991	N/A	MSNPQLIHRANENSSLFNTVKARNSKQNVFDYVNEGELNVCSYAKSRIIVNPTTSLNGDGGQTIKFELPNFGLLSDMYLQTEFARGDTNADSGAKDCFLVDMAGAFTFSKIRVVYNGNTVFETTPEHLVASLYARANREQSLVLDGMLGSGVIGASDDTHANLEGRKAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPILDVHGKAETTADRITYAGSNLICYLNELSPQELAAYQSRNYAPNSVSSQLGYSTTLLSESLATPVLATATTKGNTIKINSISGLVRRMYVFATIDSDRSSTSDKKYMNLVDISSIKLSANNQTIYEIQDCGVGIDNLNRSAGNGYQTDQFVEMYHNKLSGPCNSAVGSDTYKLMDIGVDKSVGKTTGDQFDFARVKVINFGMNPDDYSSADGSLALSQVNVPELEVKFPTGTSGAHTVHVVAELITLNTYNVSATGQINFKSISE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181391_1000323

Overview

Ecosystem & Geography

Associated Families

Sequences